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Programs as complex as ImageTrak require considerable effort and time commitment to write from scratch, with much of the work expended creating a suitable user interface. Either single images, 3D image stacks or higher-dimensional data 3D vs. University of Calgary University Dr. You are free to use and redistribute this software and documentation for non-commercial purposes, provided no modifications are made to the code or documentation. Stys and cite the ImageTrak homepage http:


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ImageTrak is an image analysis program designed for converting, viewing, and quantitatively analyzing multidimensional scientific image data.


The goal of the ImageTrak project was to develop an intuitive, user-friendly yet powerful application that allows quantitative analysis, visualization, calculation and deconvolution imagetra, fluorescence images. Laboratory for Multiple Sclerosis Research. Campus Life Go Dinos!

All related files reside within the ImageTrak package. Future plans include optimization of the deconvolution algorithms using an Altivec-enabled version of FFTWdistributed multi-processing capabilities, and incorporation of the Visualization Toolkit for true imagetrxk 3D rendering and image visualization.

ImageTrak Overview | Stys Lab

The first requirement is the ability imagwtrak easily import image data from a variety of sources. No other files are installed except an ImageTrak Preferences file is created at first launch.



Page last updated Campus Life Go Dinos! XYZT will also be collapsed into a single 3D image volume which may be confusing. The figure shows input options available for importing Nikon ids or raw binary data files. Batch importing of multiple files is also supported: To install, download the dmg and double-click the pkg installer. XZ projection of same imagetrao after deconvolution now shows the two proteins closely associated, but not completely overlapping [arrowhead] from Ouardouz et al, Neuron You can optionally skip N bytes of a custom header.


Typically, high-level software development tools that allow rapid application development are unable to generate high performance code for computation-intensive algorithms such as those required for manipulating large image data sets. Stys and cite the ImageTrak homepage http: Also the correct X, Y and if applicable Z dimensions must be entered. With the advent of new generation confocal and 2-photon laser scanning microscopes that are increasingly user-friendly, more and more labs are taking advantage of this technology to generate high-resolution 2D, 3D and 4D data sets.

Here the user selects any number of XYZ or XYZT data sets for unattended batch processing, useful because these calculations can take a long time imagstrak complete: The window below is an example of a batch deconvolution set-up. The author cannot be responsible for any losses or damages arising from the use of this software.


This is still rudimentary.

ImageTrak Software, Inc.

You may not charge any fee for the redistribution of the ImageTrak software or its documentation. Please credit the author Peter K. Spectral image processing has been greatly expanded in the v4. University of Calgary University Dr. Although ImageTrak was specifically designed for fluorescence microscopy, virtually any type of image data can be manipulated. Campus Life Go Dinos!

Fluorescence microscopy is a very powerful tool in the biological sciences. Laboratory for Multiple Sclerosis Research. The window above shows an example dialog box that allows the user to enter optical parameters used to calculate theoretical PSFs. University of Calgary University Dr. I,agetrak importing of multiple files is also supported:.

Either single images, 3D image stacks or higher-dimensional data 3D vs. For this inagetrak, it is recommended that XYZT data sets be imported as grouped data.